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Software Engineer

Eingestellt von EMBL

Gesuchte Skills: Engineer, Engineering, Jdbc, Xml

Projektbeschreibung

Job Description

We are seeking to recruit an experienced Software Engineer/Developer to work on the PhenoMeNal H2020 project, to create an e-infrastructure for large-scale computing with medical metabolomics data. You will join the Cheminformatics team at the European Bioinformatics Institute (EMBL-EBI) located at the Wellcome Genome Campus near Cambridge in the UK.

You will lead the further development, scaling and integration of existing bioinformatics solutions into a European e-infrastructure for analysing medical metabolomics data. This will lead into the development of virtual machine images (VMIs) to sustain various levels of data storage, pre-processing, integration, analysis, and visualisation. The use of VMIs will enable a flexible architecture that can run on local systems within participating and collaborating organisations, and maintain a high level of data security/integrity. Tools, services and associated software included in the different VMI's will be developed and integrated. The project will integrate well established stand-alone bioinformatics tools and a significant amount of research is necessary to investigate the requirements for interoperability of those tools in a coherent practically useful processing pipeline.

The EBI is part of the European Molecular Biology Laboratory (EMBL) and it is a world-leading bioinformatics centre providing biological data to the scientific community with expertise in data storage, analysis and representation. EMBL-EBI provides freely available data from life science experiments, performs basic research in computational biology and offers an extensive user training programme, supporting researchers in academic and industry.

Qualifications and Experience

You must have experience with the following:

•Java and associated frameworks like Spring and Hibernate
•JSP/HTML/XML
•Frontend JavaScript frameworks, like jQuery and AngularJS
•RESTful Web Services, JSON
•Maven
•Continuous Integration, Jenkins
•Batch / Script / Shell programming
•Linux/UNIX
•SQL and NoSQL databases, JDBC

You should also be experienced with agile software development. Familiarity with R, data analysis will be very beneficial. Interest in grid and cloud technologies and interactions with other large-scale EU infrastructures such as the European Grid Initiative is essential.

You will have a strong interest in software engineering along with a strong degree in computer science or a related field. You must be able to work as part of a focussed team, but as the same time be self-driven, trustworthy and able to work independently. You must be a structured worker with good communication skills, and a willingness to travel to European project meetings.

Benefits
EMBL is an inclusive, equal opportunity employer offering attractive conditions and benefits appropriate to an international research organisation. The remuneration package comprises a competitive salary, a comprehensive pension scheme and health insurance, educational and other family related benefits where applicable, as well as financial support for relocation and installation.

We provide a dynamic, international working environment and have close ties with both the University of Cambridge and the Wellcome Trust Sanger Institute.

EMBL-EBI staff also enjoy excellent sports facilities, a free shuttle bus to Cambridge and other nearby centres, an active sports and social club and an attractive working environment set in 55 acres of parkland.

The initial contract is for a period of 3 years with the possibility of a fixed-term extension.

Application Instructions

We welcome applications irrespective of gender and appointment will be based on merit alone. Applications are welcome from all nationalities - visa information will be discussed in more depth with applicants selected for interview.

Applications will close at 23:00 GMT on 2nd August

Projektdetails

  • Vertragsart:

    Contract

  • Berufserfahrung:

    Keine Angabe

Geforderte Qualifikationen

EMBL